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Figured out the modules page thing.. Sorry about two big commits..Its just a whole bunch of generated html.
Recompiled documentation for encoders -BRIAN!! How do you add encoders to the modules page?
Branching for encoder work in the library.
Updated build and documentation for libdragonfly, including reset.h, math.h and i2c.h.
Oops, I put the docs in the wrong folder.