Minor documentation improvements
fixes #570 avrdude port detection
Encoders unit test
Completed iterative test of functions in lights.h (aka LIGHT SHOW!)
Currently using orb_n_set and orb_n_set_color with indexing from 1. This breaks orb_n_set and orb_n_set_color as they are set to index from 0.
Need to document this using Doxygen
Changed analog to support status checking. Updated bom_refresh to use it.
Turned on source browsing. This might fix our problems.
Updated and removed deprecated doxygen stuff from the doxygen config file.
Added bug comment on how analog loop works.
Updated function name in test_rangefinder.c to comply with naming standard.
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