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fixes #570 avrdude port detection
Smart run around mostly works!!!
Thanks to Brian for fixing a bug in motion codedivide by 0 zero error in motion.c
Makefile cleans .csim and copy it over
GUI no longer fill the robot
added some vague file type checking to prevent running simulator in simulatorupdated the makefile to make simulator executable filenames end in .csim
Now runs at a reasonable speed.
Updated makefile to compile binaries for simulator.
Created simulator branch. Sorry for adding new branches, but I am planning on rearranging the library.
Commented some of the encoder functions.
Updated robot_slave code; reformatted a lot of stuff
dos2unix on Makefile.
Moved port to front in template makefile.
Added two lines to the default Makefile that checks for a predefined COLONYROOT variable.I suggest everyone defines a global as the ../../.. is undependable.
Added template file.